PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010086552.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ZF-HD
Protein Properties Length: 370aa    MW: 40510.2 Da    PI: 8.8639
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010086552.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.31.9e-3368123458
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                     + Y+eClkNhAa++Ggha+DGCgEfmps+++  +++++lkCaACgCHRnFHRr++e
  XP_010086552.1  68 YSYRECLKNHAATIGGHALDGCGEFMPSPSSLlSDPTSLKCAACGCHRNFHRRHPE 123
                     68**************************99999********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.5E-2768122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.69870121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-3070121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-1770129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.51E-17235307IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-28239307IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-24246302IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDLSSSSPPI SPTPTNTSPN TDSQTPPPPP PPPPPQPPLF PQPIKSLSFA AINGSFNRQQ  60
PPKIVVSYSY RECLKNHAAT IGGHALDGCG EFMPSPSSLL SDPTSLKCAA CGCHRNFHRR  120
HPEDLYHPPR HVTTGIHLLP SRPPPPLLLR RNSSPSPSLS PARSSSPGPS PTPSPTPSPH  180
SPPSVSHLPP NYSSSSYFAS PPQILLALSS GLSRPSDEQY QNLMNPTAHK MSGAENGNIT  240
NVSNARKRFR TKFSQEQKEK MCLFAEKLGW KMQRSEEKVV EEFCNEVGIR KGVLKVWMHN  300
NKHTLGKRSS SSSADRGLLI SRNVINNGTN VDDNHHNPHE EDTTDIEKDD EEDHRKANFN  360
FFANGSSSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-222473041875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010086552.10.0hypothetical protein L484_001444
TrEMBLW9QW010.0W9QW01_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.17e-28zinc finger homeodomain 1